Citations

Search Citations
Citations
401. Yerushalmi, Roie, Brandis, Alexander, Rosenbach-Belkin, Varda, Baldridge, Kim K., Scherz, Avigdor, (2006), "Modulation of fragmental charge transfer via hydrogen bonds. Direct measurement of electronic contributions.", The journal of physical chemistry. A, 110, 2: pg: 412--21, 1089-5639, (DOI: 10.1021/jp052809+).
BibTex | EndNote
402. Wilmarth, P. A., Tanner, S., Dasari, S., Nagalla, S. R., Riviere, M. A., Bafna, V., Pevzner, P. A., David, L. L., (2006), "Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: does deamidation contribute to crystallin insolubility?", Journal of proteome research, 5, 10: pg: 2554--66, 1535-3893, (DOI: 10.1021/pr050473a).
BibTex | EndNote
403. Wagoner, Jason A., Baker, Nathan Andrew, (2006), "Assessing implicit models for nonpolar mean solvation forces: the importance of dispersion and volume terms.", Proceedings of the National Academy of Sciences of the United States of America, 103, 22: pg: 8331--6, 0027-8424, (DOI: 10.1073/pnas.0600118103).
BibTex | EndNote
404. Vigil, Dominico, Lin, Jung-Hsin, Sotriffer, Christoph A., Pennypacker, Juniper K., McCammon, J. Andrew, Taylor, Susan S., (2006), "A simple electrostatic switch important in the activation of type I protein kinase A by cyclic AMP.", Protein science : a publication of the Protein Society, 15, 1: pg: 113--21, 0961-8368 (Print)$\backslash$n0961-8368 (Linking) (DOI: 10.1110/ps.051723606).
BibTex | EndNote
405. Ung, Man-Un, Lu, Benzhuo, McCammon, J. A., (2006), "E230Q mutation of the catalytic subunit of cAMP-dependent protein kinase affects local structure and the binding of peptide inhibitor.", Biopolymers, 81, 6: pg: 428--39, 1002100992 0006-3525, (DOI: 10.1002/bip.20434).
BibTex | EndNote
406. Saucerman, J. J., McCulloch, A. D., (2006), "Cardiac beta-Adrenergic Signaling: From Subcellular Microdomains to Heart Failure", Annals of the New York Academy of Sciences, 1080, 1: pg: 348--361, 1573316512 0077-8923, (DOI: 10.1196/annals.1380.026).
BibTex | EndNote
407. Saucerman, Jeffrey J., Zhang, Jin, Martin, Jody C., Peng, Lili X., Stenbit, Antine E., Tsien, Roger Y., McCulloch, Andrew D., (2006), "Systems analysis of PKA-mediated phosphorylation gradients in live cardiac myocytes.", Proceedings of the National Academy of Sciences of the United States of America, 103, 34: pg: 12923--8, 0027-8424 (Print)$\backslash$r0027-8424 (Linking) (DOI: 10.1073/pnas.0600137103).
BibTex | EndNote
408. Perryman, Alexander L., Lin, Jung-Hsin, McCammon, J. Andrew, (2006), "Restrained molecular dynamics simulations of HIV-1 protease: the first step in validating a new target for drug design.", Biopolymers, 82, 3: pg: 272--84, 1918-7033 0006-3525, (DOI: 10.1002/bip.20497).
BibTex | EndNote
409. Onuchic, Jos N., Kobayashi, Chigusa, Miyashita, Osamu, Jennings, Patricia, Baldridge, Kim K., (2006), "Exploring biomolecular machines: energy landscape control of biological reactions.", Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 361, 1472: pg: 1439--43, 0962-8436 (Print)$\backslash$r0962-8436 (Linking) (DOI: 10.1098/rstb.2006.1876).
BibTex | EndNote
410. O'Rourke, Sean, Chechik, Gal, Friedman, Robin, Eskin, Eleazar, (2006), "Discrete profile comparison using information bottleneck.", BMC bioinformatics, 7 Suppl 1, Suppl 1: pg: S8, 1471-2105, (DOI: 10.1186/1471-2105-7-S1-S8).
BibTex | EndNote
411. McCulloch, Andrew D., Omens, Jeffrey H., (2006), "Myocyte shearing, myocardial sheets, and microtubules.", Circulation research, 98, 1: pg: 1--3, 0000200395 1524-4571, (DOI: 10.1161/01.RES.0000200395.82480.8d).
BibTex | EndNote
412. Marshall, Trevor G., Lee, Robert E., Marshall, Frances E., (2006), "Common angiotensin receptor blockers may directly modulate the immune system via VDR, PPAR and CCR2b.", Theoretical biology \& medical modelling, 3, 1: pg: 1, 1742-4682 (Electronic)$\backslash$n1742-4682 (Link, (DOI: 10.1186/1742-4682-3-1).
BibTex | EndNote
413. Marchini, Jonathan, Cutler, David, Patterson, Nick, Stephens, Matthew, Eskin, Eleazar, Halperin, Eran, Lin, Shin, Qin, Zhaohui S., Munro, Heather M., Abecasis, Goncalo R., Donnelly, Peter and, (2006), "A comparison of phasing algorithms for trios and unrelated individuals.", American journal of human genetics, 78, 3: pg: 437--50, 0002-9297 (Print) 0002-9297, (DOI: 10.1086/500808).
BibTex | EndNote
414. Lorenzen-Schmidt, Ilka, Schmid-Schnbein, Geert W., Giles, Wayne R., McCulloch, Andrew D., Chien, Shu, Omens, Jeffrey H., (2006), "Chronotropic Response of Cultured Neonatal Rat Ventricular Myocytes to Short-Term Fluid Shear", Cell Biochemistry and Biophysics, 46, 2: pg: 113--122, 0000249408 1085-9195, (DOI: 10.1385/CBB:46:2:113).
BibTex | EndNote
415. Li, Wilfred W., Baker, Nathan, Baldridge, Kim, McCammon, J. Andrew, Holst, Michael, McCulloch, Andrew D., Michailova, Anushka, Papadopoulos, Phil, Olson, Art, Sanner, Michel, Arzberger, Peter W., (2006), "National Biomedical Computation Resource (NBCR): Developing End-to-End$\backslash$nCyberinfrastructure for Multiscale Modeling in Biomedical Research", 2, 3: pg: 6--17
BibTex | EndNote
416. Li, W. W., Krishnan, S., Mueller, K., Ichikawa, K., Date, S., Dallakyan, S., Sanner, M., Misleh, C., and, Tatebe, O., Arzberger, P. W., (2006), "Building cyberinfrastructure for bioinformatics using service oriented architecture": pg: 8 --39, 0-7695-2585-7, (DOI: 10.1109/CCGRID.2006.1630932).
BibTex | EndNote
417. Lathers, A., and Kulungowski, A., Lin, A. W., Mehta, Gaurang, Peltier, S. T., Deelman, E., Ellisman, M. H., (2006), "Enabling Parallel Scientific Applications with Workflow Tools": pg: 55--60, 1-4244-0420-7, (DOI: 10.1109/CLADE.2006.1652055).
BibTex | EndNote
418. Krishnan, Sriram, Stearn, Brent, Bhatia, Karan, Baldridge, Kim, Li, Wilfred, Arzberger, Peter, (2006), "Opal: SimpleWeb Services Wrappers for Scientific Applications", 18, 22: pg: 823--832, 0-7695-2669-1, (DOI: 10.1109/ICWS.2006.96).
BibTex | EndNote
419. Konecny, Robert, Trylska, Joanna, Tama, Florence, Zhang, Deqiang, Baker, Nathan A., Brooks, Charles L., McCammon, J. A., (2006), "Electrostatic properties of cowpea chlorotic mottle virus and cucumber mosaic virus capsids.", Biopolymers, 82, 2: pg: 106--20, 6176321972 0006-3525, (DOI: 10.1002/bip.20409).
BibTex | EndNote
420. Kerckhoffs, R. C. P., Healy, S. N., Usyk, T. P., McCulloch, A. D., (2006), "Computational Methods for Cardiac Electromechanics", Proceedings of the IEEE, 94, 4: pg: 769--783, 0018-9219, (DOI: 10.1109/JPROC.2006.871772).
BibTex | EndNote
421. Jones, Neil C., Pevzner, Pavel A., (2006), "Comparative genomics reveals unusually long motifs in mammalian genomes.", Bioinformatics (Oxford, England), 22, 14: pg: e236--42, 1367-4803 1367-4811, (DOI: 10.1093/bioinformatics/btl265).
BibTex | EndNote
422. Jiang, Zhengfan, Georgel, Philippe, Li, Chenglong, Choe, Jungwoo, Crozat, Karine, Rutschmann, Sophie, Du, Xin, Bigby, Tim, Mudd, Suzanne, Sovath, Sosathya, Wilson, Ian a, Olson, Arthur, Beutler, Bruce, (2006), "Details of Toll-like receptor:adapter interaction revealed by germ-line mutagenesis.", Proceedings of the National Academy of Sciences of the United States of America, 103, 29: pg: 10961--6, 0027-8424 (Print)$\backslash$n1091-6490 (Electroni, (DOI: 10.1073/pnas.0603804103).
BibTex | EndNote
423. Jain, Tushar, Cerutti, David S., McCammon, J. Andrew, (2006), "Configurational-bias sampling technique for predicting side-chain conformations in proteins.", Protein science : a publication of the Protein Society, 15, 9: pg: 2029--39, 1002100992 0961-8368, (DOI: 10.1110/ps.062165906).
BibTex | EndNote
424. Ivanov, Ivaylo, Chapados, Brian R., McCammon, J. Andrew, Tainer, John A., (2006), "Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications.", Nucleic acids research, 34, 20: pg: 6023--33, 1362-4962 (Electronic)$\backslash$r0305-1048 (Link, (DOI: 10.1093/nar/gkl744).
BibTex | EndNote
425. Hunter, P. J., Li, W. W., McCulloch, A. D., Noble, Denis, (2006), "Multiscale modeling: physiome project standards, tools, and databases", Computer, 39, 11: pg: 48--54, 0018-9162, (DOI: 10.1109/MC.2006.392).
BibTex | EndNote
426. Hamacher, Kay, Trylska, Joanna, McCammon, J. Andrew, (2006), "Dependency map of proteins in the small ribosomal subunit.", PLoS computational biology, 2, 2: pg: e10, 1553-7358 (Electronic) 1553-7358, (DOI: 10.1371/journal.pcbi.0020010).
BibTex | EndNote
427. Gullingsrud, Justin, Kim, Choel, Taylor, Susan S., McCammon, J. Andrew, (2006), "Dynamic binding of PKA regulatory subunit RI alpha.", Structure (London, England : 1993), 14, 1: pg: 141--9, 0969-2126 (Print) 0969-2126 (Linking) 0969-2126, (DOI: 10.1016/j.str.2005.09.019).
BibTex | EndNote
428. Grant, Barry J., Rodrigues, Ana P. C., ElSawy, Karim M., McCammon, J. Andrew, Caves, Leo S. D., (2006), "Bio3d: an R package for the comparative analysis of protein structures.", Bioinformatics (Oxford, England), 22, 21: pg: 2695--6, 1367-4803 1367-4811, (DOI: 10.1093/bioinformatics/btl461).
BibTex | EndNote
429. Giorgione, Jennifer R., Lin, Jung-Hsin, McCammon, J. Andrew, Newton, Alexandra C., (2006), "Increased membrane affinity of the C1 domain of protein kinase Cdelta compensates for the lack of involvement of its C2 domain in membrane recruitment.", The Journal of biological chemistry, 281, 3: pg: 1660--9, 8585348585 0021-9258, (DOI: 10.1074/jbc.M510251200).
BibTex | EndNote
430. Flaim, Sarah N., Giles, Wayne R., McCulloch, Andrew D., (2006), "Contributions of sustained INa and IKv43 to transmural heterogeneity of early repolarization and arrhythmogenesis in canine left ventricular myocytes.", American journal of physiology. Heart and circulatory physiology, 291, 6: pg: H2617--29, 0363-6135 (Print)$\backslash$r0363-6135 (Linking) (DOI: 10.1152/ajpheart.00350.2006).
BibTex | EndNote
431. Eubanks, Lisa M., Rogers, Claude J., Beuscher, Albert E., Koob, George F., Olson, Arthur J., Dickerson, Tobin J., Janda, Kim D., (2006), "A molecular link between the active component of marijuana and Alzheimer's disease pathology.", Molecular pharmaceutics, 3, 6: pg: 773--7, 1543-8384, (DOI: 10.1021/mp060066m).
BibTex | EndNote
432. Eskin, Eleazar, Sharan, Roded, Halperin, Eran, (2006), "A note on phasing long genomic regions using local haplotype predictions.", Journal of bioinformatics and computational biology, 4, 3: pg: 639--47, 0219-7200 (Print)$\backslash$r0219-7200 (Linking)
BibTex | EndNote
433. Dzubiella, J., Swanson, J. M. J., McCammon, J. A., (2006), "Coupling hydrophobicity, dispersion, and electrostatics in continuum solvent models.", Physical review letters, 96, 8: pg: 087802, 0031-9007, (DOI: 10.1103/PhysRevLett.96.087802).
BibTex | EndNote
434. Dzubiella, J., Swanson, J. M. J., McCammon, J. A., (2006), "Coupling nonpolar and polar solvation free energies in implicit solvent models.", The Journal of chemical physics, 124, 8: pg: 084905, 0021-9606, (DOI: 10.1063/1.2171192).
BibTex | EndNote
435. de Oliveira, Csar Augusto F., Hamelberg, Donald, McCammon, J. Andrew, (2006), "On the application of accelerated molecular dynamics to liquid water simulations.", The journal of physical chemistry. B, 110, 45: pg: 22695--701, 1520-6106, (DOI: 10.1021/jp062845o).
BibTex | EndNote
436. Costandi, Peter N., Frank, Lawrence R., McCulloch, Andrew D., Omens, Jeffrey H., (2006), "Role of diastolic properties in the transition to failure in a mouse model of the cardiac dilatation.", American journal of physiology. Heart and circulatory physiology, 291, 6: pg: H2971--9, 0363-6135, (DOI: 10.1152/ajpheart.00571.2006).
BibTex | EndNote
437. Chang, Chia-En, Shen, Tongye, Trylska, Joanna, Tozzini, Valentina, McCammon, J. Andrew, (2006), "Gated binding of ligands to HIV-1 protease: Brownian dynamics simulations in a coarse-grained model.", Biophysical journal, 90, 11: pg: 3880--5, 0006-3495, (DOI: 10.1529/biophysj.105.074575).
BibTex | EndNote
438. Chaisson, M. J., Raphael, B. J., Pevzner, P. a, (2006), "Microinversions in mammalian evolution.", Proceedings of the National Academy of Sciences of the United States of America, 103, 52: pg: 19824--9, 0027-8424, (DOI: 10.1073/pnas.0603984103).
BibTex | EndNote
439. Cerutti, David S., Jain, Tushar, McCammon, J. Andrew, (2006), "CIRSE: a solvation energy estimator compatible with flexible protein docking and design applications.", Protein science : a publication of the Protein Society, 15, 7: pg: 1579--96, 0961-8368, (DOI: 10.1110/ps.051985106).
BibTex | EndNote
440. Bui, Jennifer M., Radic, Zoran, Taylor, Palmer, McCammon, J. Andrew, (2006), "Conformational transitions in protein-protein association: binding of fasciculin-2 to acetylcholinesterase.", Biophysical journal, 90, 9: pg: 3280--7, 0006-3495, (DOI: 10.1529/biophysj.105.075564).
BibTex | EndNote
441. Bui, Jennifer M., McCammon, J. Andrew, (2006), "Protein complex formation by acetylcholinesterase and the neurotoxin fasciculin-2 appears to involve an induced-fit mechanism.", Proceedings of the National Academy of Sciences of the United States of America, 103, 42: pg: 15451--6, 0027-8424 (Print) 0027-8424, (DOI: 10.1073/pnas.0605355103).
BibTex | EndNote
442. Broderick, Kate E., Feala, Jake, McCulloch, Andrew, Paternostro, Giovanni, Sharma, Vijay S., Pilz, Renate B., Boss, Gerry R., (2006), "The nitric oxide scavenger cobinamide profoundly improves survival in a Drosophila melanogaster model of bacterial sepsis.", FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 20, 11: pg: 1865--73, 1530-6860 (Electronic)$\backslash$r0892-6638 (Link, (DOI: 10.1096/fj.06-5780com).
BibTex | EndNote
443. Bourque, Guillaume, Tesler, Glenn, Pevzner, Pavel A., (2006), "The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction.", Genome research, 16, 3: pg: 311--3, 1088-9051, (DOI: 10.1101/gr.4631806).
BibTex | EndNote
444. Bhatia, Karan, Catarion, Daniel, Stearn, Brent, (2006), "Extending Grid Protocols onto the Desktop using the Mozilla Framework":
BibTex | EndNote
445. Baitaluk, Michael, Sedova, Mayya, Ray, Animesh, Gupta, Amarnath, (2006), "BiologicalNetworks: visualization and analysis tool for systems biology.", Nucleic acids research, 34, Web Server issue: pg: W466--71, 1362-4962 (Electronic) 1362-4962, (DOI: 10.1093/nar/gkl308).
BibTex | EndNote
446. Baitaluk, Michael, Qian, Xufei, Godbole, Shubhada, Raval, Alpan, Ray, Animesh, Gupta, Amarnath, (2006), "PathSys: integrating molecular interaction graphs for systems biology.", BMC bioinformatics, 7: pg: 55, 1471-2105 (Electronic)$\backslash$r1471-2105 (Link, (DOI: 10.1186/1471-2105-7-55).
BibTex | EndNote
447. Bailey, Timothy L., Williams, Nadya, Misleh, Chris, Li, Wilfred W., (2006), "MEME: discovering and analyzing DNA and protein sequence motifs.", Nucleic acids research, 34, Web Server issue: pg: W369--73, 1362-4962, (DOI: 10.1093/nar/gkl198).
BibTex | EndNote
448. and, and, Li, W. W., Tatabe, O., (2006), "GDIA: A Scalable Grid Infrastructure for Data Intensive Applications", 2006 International Conference on Hybrid Information Technology, January: pg: 347--354, 0-7695-2674-8, (DOI: 10.1109/ICHIT.2006.253511).
BibTex | EndNote
449. Aksoylu, Burak, Holst, Michael, (2006), "Optimality of Multilevel Preconditioners for Local Mesh Refinement in Three Dimensions", SIAM Journal on Numerical Analysis, 44, 3: pg: 1005--1025, 0036-1429, (DOI: 10.1137/S0036142902406119).
BibTex | EndNote
450. (2006), "A mutation linked with autism reveals a common mechanism of endoplasmic reticulum retention for the alpha,beta-hydrolase fold protein family.", The Journal of biological chemistry, 281, 14: pg: 9667--76, 0021-9258 (Print) 0021-9258, (DOI: 10.1074/jbc.M510262200).
BibTex | EndNote
Reference Type
Author Geography
Author Affiliation

Export Multiple Citations

Check the citations that you would like to have exported.

|